Our BACTER Journal Club is held on Tuesdays at 2:30pm in 6630 Biochem Annex. All are welcome to join us. The seminar is an official seminar in Biochemistry, so can be taken for seminar credit.


Fall 2006

September 26, Maya Mincheva

October 24, Mike Gilson

November 7, Irene Ong

November 21, Roummel Marcia

Spring 2007

January 23, Raman Lall

February 13, Julie Simons

February 27, Omar Demerdash

March 13, Yann Dufour

March 27, Vanitha Suresh

April 10, Yue Pan

April 24, Ryan Bannen

May 1, Peter Koenig

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ARCHIVES

Spring 2006

January 27, Peter Koenig, Research Interests

February 3, Sarah Cunningham (slides), Stochastic Gene Expression in a Lentiviral Positive-Feedback Loop: HIV-1 Tat Fluctuations Drive Phenotypic Diversity

February 10, Omar Demerdash (slides), Simultaneous determination of protein structure and dynamics

February 24, Ryan Bannen, (slides) (folding movie), Toward High-Resolution de Novo Structure Prediction for Small Proteins

March 3, Xiao-Yu Liu (slides), Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

March 10, Yann Dufour (slides), Systems-level analyses identify extensive coupling among gene expression machines

March 24, Yue Pan (slides), Integrating high-throughput and computational data elucidates bacterial networks

March 31, Julie Simons (slides), Regulated Pole-to-Pole Oscillations of a Bacterial Gliding Motility Protein

April 7, Bob Mau (slides), Metagenomics: DNA sequencing of environmental samples

April 21, Vanitha Suresh (slides), Progress in Modeling of Protein Structures and Interactions

April 28, Mike Gilson (slides), Making sense of it all: Bacterial chemotaxis

May 12, Raman Lall, Research Highlights

Fall 2005

September 9, Bob Mau, Genome-wide strategies for detecting multiple loci that influence complex diseases

September 23, Omar Demerdash, Frontier Bonds in QM/MM Methods

September 30, Vanitha Suresh, On Design of Optimal Nonlinear Kernel Potential Function for Protein Folding and Protein Design

October 7, Xiao-Yu Liu, Optical Mapping, and Its Use in Microbial Genome Research

October 14, Julie Simons, Initiation of Slime Mold Aggregation Viewed as an Instability

October 21, Ryan Bannen, Normal Modes for Predicting Protein Motions

November 4, Yann Dufour, An empirical Bayes approach to inferring large-scale gene association networks

November 11, Michael Gilson, DAGchainer: a tool for mining segmental genome duplications and synteny

November 18, Yue Pan, Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data

December 2, Sarah Cunningham, Structural Framework for Catalysis and Regulation in Ribulose-1,5-bisphosphate Carboxylase/Oxygenase

Spring 2005

March 11, Sarah Cunningham, Metabolic control analysis under uncertainty: Framework development and case studies

April 15, Anoop Gupta and Vanitha Suresh, Knowledge-based Potentials for Protein Folding